Workshop: Towards reproducible computational biology

Schmeier Research Group // Massey University

TEACHING · WORKSHOP · REPRODUCIBILITY

Sebastian gave a seminar followed by a hands-on session with the title “Towards reproducible computational biology” at the ResBaz conference in Auckland. He discussed life science package managers, workflow management system, as well as containerization and how this can be used to produce reproducible bioinformatics data analysis workflows. The workshop tutorial material is available at https://reproducible.sschmeier.com. The slides of the seminar are available at figshare (https://doi.org/10.6084/m9.figshare.6726416.v1):

Publications // latest

DeePEL: Deep learning architecture to recognize p-lncRNA and e-lncRNA promoters. In proceedings: IEEE International Conference on Bioinformatics and Biomedicine, 2019, B516, accepted.

Effect of lncRNA-125 on mouse and human macrophage polarization and during Mtb infection. European Journal of Immunology, 2019, 49, S3:256-257. (In proceedings: International Congress of Immunology ICI)

IL-4/IL-13-inducible lincRNA-MIR99AHG regulates macrophage polarization and acts as a promoter of Mtb growth. European Journal of Immunology, 2019, 49, S3:257-257. (In proceedings: International Congress of Immunology ICI)

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