Workshop: Towards reproducible computational biology

Schmeier Research Group // Massey University

TEACHING · WORKSHOP · REPRODUCIBILITY

Sebastian gave a seminar followed by a hands-on session with the title “Towards reproducible computational biology” at the ResBaz conference in Auckland. He discussed life science package managers, workflow management system, as well as containerization and how this can be used to produce reproducible bioinformatics data analysis workflows. The workshop tutorial material is available at https://reproducible.sschmeier.com. The slides of the seminar are available at figshare (https://doi.org/10.6084/m9.figshare.6726416.v1):

Publications // latest

Metagenomics and transcriptomics data from human colorectal cancer Sci. Data. 2019, 6:116

Differential targeting of c-MAF, Bach-1 and Elmo-1 by microRNA-143 and microRNA-365 promotes the intracellular growth of Mycobacterium tuberculosis in alternatively IL-4/IL-13 activated macrophages. Front. Immunol. 2019, 10:421.

Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection. BMC Genomics, 2019, 20:71

News&Blog // latest

[ 20190528 | news ] Recent funding successes.

[ 20190319 | news ] New publication: Frontiers in Immonology

[ 20190122 | news ] New publication: BMC Genomics

[ 20181230 | news ] New publication: Molecular Phylogenetics and Evolution

[ 20180703 | news ] New publication: Nature Methods

Tweets // latest